Integrative taxonomy of crustacean y-larvae (Thecostraca: Facetotecta) using laboratory-rearing and molecular analyses of single specimens, with the description of a new vermiform species

Facetotecta, the taxon established for 'y-larvae', is the last major crustacean group for which the adult stage remains unknown. With only 14 described nominal species, all in the genus Hansenocaris, their incompletely known life cycle, small size and dearth of molecular data have hampered assessments of their true species diversity. Based on field studies during which > 11 000 y-larvae were sampled, a new integrative approach for studying the taxonomy of y-larvae is outlined. It focuses on last-stage nauplii and y-cyprids and includes methods for rearing lecithotrophic y-larvae for documenting the morphology of specimens with live photomicroscopy and scanning electron microscopy (SEM) and for obtaining molecular systematic data. This new and integrated approach, whereby each single specimen provides multiple kinds of information, was implemented to describe Hansenocaris demodex sp. nov., a unique y-larval form with semi-vermiform nauplii that occurs in the waters of Okinawa (southern Japan) and Taiwan. A preliminary Facetotecta phylogeny shows remarkable congruence between the morphology of all newly sequenced y-larvae and molecular data (18S rDNA). Four independent clades are formed by H. demodex and three other types/species of y-larvae, together being the sister-group to a smaller clade including H. itoi and unnamed species from GenBank

Lösungen und Leitfäden für das institutionelle Forschungsdatenmanagement

Hochschulen und deren Zentraleinrichtungen beschäftigen sich zunehmend mit dem Thema Forschungsdatenmanagement (FDM), um ihre Forschenden adäquat zu unterstützen. Nicht zuletzt aufgrund neuer Verlags- und Förderanforderungen wünschen sich Forschende Beratung und Orientierung, wie sie mit ihren Forschungsdaten umgehen sollen. Damit Hochschulen schnell und nachhaltig Lösungen zum institutionellen FDM etablieren können, haben fünf Berliner und Brandenburger Universitäten im gemeinsamen Verbundvorhaben FDMentor mit Förderung des Bundesministeriums für Bildung und Forschung (BMBF) entsprechende Leitfäden und Werkzeuge erarbeitet. Die innerhalb von zwei Jahren (2017–2019) entstandenen Ergebnisse in den Bereichen Strategieentwicklung, Forschungsdaten-Policy, rechtliche Aspekte und Kompetenzausbau finden über das Verbundprojekt hinaus ihre Anwendung.Peer Reviewe

t8code - scalable and modular adaptive mesh refinement

t8code is a versatile open source library for parallel adaptive mesh refinement on hybrid meshes. [1] It is exascale-ready and capable of efficiently managing meshes with up to a trillion elements distributed on a million of cores as already shown in a peer-reviewed research paper. [2] On the top-level, t8code uses forests of trees to represent unstructured meshes with complex geometries. Space-filling curves index individual elements within a forest, which requires only minimal amounts of memory allowing for efficient and scalable algorithms of mesh management. In contrast to existing solutions, t8code has the capability to manage an arbitrary number of tetrahedra, hexahedra, prisms and pyramids within the same mesh. With this poster we want to present the first official release (v1.0) of our software and give a quick overview over its main features. Besides presenting the core algorithms of t8code, we give application scenarios on how our library integrates into major simulation frameworks for weather forecasting, climate modeling and engineering; and how they benefit from our approach to do AMR. [1] https://github.com/DLR-AMR/t8code [2] https://epubs.siam.org/doi/abs/10.1137/20M138303

Search for heavy resonances decaying to two Higgs bosons in final states containing four b quarks

A search is presented for narrow heavy resonances X decaying into pairs of Higgs bosons (H) in proton-proton collisions collected by the CMS experiment at the LHC at root s = 8 TeV. The data correspond to an integrated luminosity of 19.7 fb(-1). The search considers HH resonances with masses between 1 and 3 TeV, having final states of two b quark pairs. Each Higgs boson is produced with large momentum, and the hadronization products of the pair of b quarks can usually be reconstructed as single large jets. The background from multijet and t (t) over bar events is significantly reduced by applying requirements related to the flavor of the jet, its mass, and its substructure. The signal would be identified as a peak on top of the dijet invariant mass spectrum of the remaining background events. No evidence is observed for such a signal. Upper limits obtained at 95 confidence level for the product of the production cross section and branching fraction sigma(gg -> X) B(X -> HH -> b (b) over barb (b) over bar) range from 10 to 1.5 fb for the mass of X from 1.15 to 2.0 TeV, significantly extending previous searches. For a warped extra dimension theory with amass scale Lambda(R) = 1 TeV, the data exclude radion scalar masses between 1.15 and 1.55 TeV

Hyperoxemia and excess oxygen use in early acute respiratory distress syndrome : Insights from the LUNG SAFE study

Publisher Copyright: © 2020 The Author(s). Copyright: Copyright 2020 Elsevier B.V., All rights reserved.Background: Concerns exist regarding the prevalence and impact of unnecessary oxygen use in patients with acute respiratory distress syndrome (ARDS). We examined this issue in patients with ARDS enrolled in the Large observational study to UNderstand the Global impact of Severe Acute respiratory FailurE (LUNG SAFE) study. Methods: In this secondary analysis of the LUNG SAFE study, we wished to determine the prevalence and the outcomes associated with hyperoxemia on day 1, sustained hyperoxemia, and excessive oxygen use in patients with early ARDS. Patients who fulfilled criteria of ARDS on day 1 and day 2 of acute hypoxemic respiratory failure were categorized based on the presence of hyperoxemia (PaO2 > 100 mmHg) on day 1, sustained (i.e., present on day 1 and day 2) hyperoxemia, or excessive oxygen use (FIO2 ≥ 0.60 during hyperoxemia). Results: Of 2005 patients that met the inclusion criteria, 131 (6.5%) were hypoxemic (PaO2 < 55 mmHg), 607 (30%) had hyperoxemia on day 1, and 250 (12%) had sustained hyperoxemia. Excess FIO2 use occurred in 400 (66%) out of 607 patients with hyperoxemia. Excess FIO2 use decreased from day 1 to day 2 of ARDS, with most hyperoxemic patients on day 2 receiving relatively low FIO2. Multivariate analyses found no independent relationship between day 1 hyperoxemia, sustained hyperoxemia, or excess FIO2 use and adverse clinical outcomes. Mortality was 42% in patients with excess FIO2 use, compared to 39% in a propensity-matched sample of normoxemic (PaO2 55-100 mmHg) patients (P = 0.47). Conclusions: Hyperoxemia and excess oxygen use are both prevalent in early ARDS but are most often non-sustained. No relationship was found between hyperoxemia or excessive oxygen use and patient outcome in this cohort. Trial registration: LUNG-SAFE is registered with ClinicalTrials.gov, NCT02010073publishersversionPeer reviewe

Large expert-curated database for benchmarking document similarity detection in biomedical literature search

Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles. The collected data cover 76% of all unique PubMed Medical Subject Headings descriptors. No systematic biases were observed across different experience levels, research fields or time spent on annotations. More importantly, annotations of the same document pairs contributed by different scientists were highly concordant. We further show that the three representative baseline methods used to generate recommended articles for evaluation (Okapi Best Matching 25, Term Frequency-Inverse Document Frequency and PubMed Related Articles) had similar overall performances. Additionally, we found that these methods each tend to produce distinct collections of recommended articles, suggesting that a hybrid method may be required to completely capture all relevant articles. The established database server located at https://relishdb.ict.griffith.edu.au is freely available for the downloading of annotation data and the blind testing of new methods. We expect that this benchmark will be useful for stimulating the development of new powerful techniques for title and title/abstract-based search engines for relevant articles in biomedical research.Peer reviewe

Measurement of the top quark mass using charged particles in pp collisions at root s=8 TeV

Peer reviewe

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Pictures illustrate the post-settlement metamorphosis in three androdioecious barnacles; Scalpellum scalpellum, Octolasmis warwickii, Smilium scorpio